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gwas summary statistics

Hello,

I want to download gwas summary statistics for Alzheimer's disease.

I am trying to download it from gwas catalog but there its not divided into different chromosomes or some information is missing.

For example: one paper has its like this:

         SNP  A1  A2     FRQ    INFO    BETA      SE       P
    rs915677   G   A  0.0809  0.9119 -0.0034  0.1496   0.982
   rs9604721   C   T  0.0130  0.9868 -0.0837  0.3461  0.8091
  rs12159982   C   T  0.0000  0.0000      NA      NA      NA
   rs4389403   G   A  0.1243  0.9112  0.0243  0.1237  0.8443
ad gwas summary-statistics predixcan
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updated by Jeremy Leipzig Jeremy Leipzig • written by rheab1230 • rheab1230

1 answer

SumStatsRehab (https://github.com/Kukuster/SumStatsRehab | https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-022-04920-7) can be used to look up the rsIDs and restore the chromosome and position information.

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written by LChart LChart

Is there any site where i can download AD gwas summary statistics which have all the columns

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written by rheab1230 • rheab1230

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