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Compare whole genomes

Hi everyone,

I'm focus on virus evolution. I want to determine the genetic component(s), gene o genes that explain a morphologic characteristic of some virus variants. I created two phylogenetically related databases. Can anyone suggest any software to compare whole genomes? I need to identify the gene(s) or nucleotide variant responsible for a phenotype.

Thanks

genomes virus

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updated 3.6 years ago by GenoMax

• written 3.6 years ago by Vero_virus •

You can either use nextstrain suite of apps or specifically augur to do phylogenomics of viruses ( see https://github.com/nextstrain )

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written 3.6 years ago by GenoMax

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