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Problem with GenemarkES

Hello everyone,

I am currently trying to annotate genome of a fungal plant pathogen via genemark ES.

My command is: perl /path/to/gmes_petap.pl --ES --fungus --cores 16 --sequence myseq.fasta

I'm getting the error message:

Can't exec "/path/gmes_linux_64/gc_distr.pl": Permission denied at /path/gmes_linux_64/gmmes_petap.pl line 1883.
error on call: /path/gmes_linux_64/gc_distr.pl --in data/na.fna --out info/dna.gc.csv --w 1000,8000

I have tried several things, such as using chmod to give permission on this files but I'm getting the same error message again.

Any help will be appreciated.

genemark
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written by barantaylan11 • barantaylan11

Just to be sure you actually have a real file path in place of /path/to above. You have simply removed it from this post (which is fine).

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written by GenoMax GenoMax

Hello GenoMax, Yes, I have a real path and removed it from this post :)

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written by barantaylan11 • barantaylan11

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