find mouse homologs to human long non coding rnas

Hello,

I am trying to find mouse homologs for human lncRNAs. I pulled down all lncRNA gene ids from gencode database. I tried to use biomaRt, but it returned homologs for 2 out of ~ 20,000 lncRNAs. Any suggestions?

Best, Tarek

human lncnra homologs mouse

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updated 3.6 years ago by mohammadhassanj

• written 3.6 years ago by tarek.mohamed

blastn on all the human-mouse lncRNAs (genCode) : downloadFile

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written 3.6 years ago by mohammadhassanj

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