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Reference mitochondrial DNA in GRCh37

I have a VCF file that uses assembly h19. How can I determine whether the reference sequence that has been used for the mitochondrial chromosome is YRI or rCRS?

grch37 rcrs yri
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written by paolo • paolo

1 answer

Can you check the header of your VCF? Yoruba 16571bp, rCRS is 16569bp

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written by Jeremy Leipzig Jeremy Leipzig

Thank you for the tip! It is the Yoruba.

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written by paolo • paolo

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