FRASER annotation and interpretation
Hi,
I'm having some trouble annotating splice sites in FRASER. Following the vingette, using biomaRt
library(biomaRt)
fds_anno <- annotateRanges(fds_fraser)
res <- results(fds_anno, zScoreCutoff=2, padjCutoff=NA, deltaPsiCutoff=0.1)
I get null values for the hgncSymbol column corresponding to annotation that FRASER outputs. I'm not entirely sure why it is not working?
I also seem to be getting no significant splicing sites being detected (padj < 0.05). Is it possible there is just no significant hits?
Many thanks
• 679 views
•
link
0 answers
No answers yet.
Log in to answer this question.