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Import quant.sf files

Hi,

I have a problem in importing quant.sf files. I've already read a lot of posts, but I can't solve the issue. I have ~600 quant.sf files obtained from Dragen RNA analysis and they are all in the same folder. I would like to import them in R to make DE analysis and I also would like to obtain a counts and a TPM matrices. The output of Dragen has already the transcript ID, the length, the count and the TPM in each file.

Thank you!

tximport rnaseq tximeta

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