growthpred' problem
python2 /nfs6/public2/User/name/soft/growthpred/growthpred-v1.07/growthpred-v1.07.py -f ecoli_ribosomal_genes.txt -g ecoli_complete_genome.txt -o test -c 0 -S
GROWTHPRED VERSION 1.07
Processing single genome sequences
Bootstrap HEG sequences
Bootstrap control sequences
Traceback (most recent call last):
File "/nfs6/public2/User/name/soft/growthpred/growthpred-v1.07/growthpred-v1.07.py", line 396, in <module>
main()
File "/nfs6/public2/User/name/soft/growthpred/growthpred-v1.07/growthpred-v1.07.py", line 354, in main
nucfreqs=Getnucfreq(dirbin, dirinput, othfile)
File "/nfs6/public2/User/name/soft/growthpred/growthpred-v1.07/growthpred-v1.07.py", line 173, in Getnucfreq
nucfreqs = subprocess.Popen(["%swcountq" %(direx), "%s%s" %(dirfile,file)], stdout=subprocess.PIPE).communicate()[0]
File "/usr/lib64/python2.7/subprocess.py", line 711, in __init__
errread, errwrite)
File "/usr/lib64/python2.7/subprocess.py", line 1327, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
how can I fix this? anybody can help? Thank you!
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