Markers from Gene Expression Profiles (RNA-seq)
Hello, I have gene expression profiles from ENCODE for 4 single-lineage cell types (total RNA-seq). I want to find the markers/differentially expressed genes that differ between these four lineages. Most out-of-the-box tools are meant for clustering and take an activity matrix of thousands of cells as input. Still new to this -
• 517 views
•
link
updated
by
Ram
•
written
by
summer_researcher •
•
written
by
summer_researcher •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Mixed marker expression in Xenium data
written by Song •
-
single-cell differential expression of unbalanced cell number
written by Yingying •
-
Estimate cell label fitness in a clustering
written by roussine •
-
News: University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
written by mia.nahom •
-
Neuronal markers are expressed in all cell types in 10X single-cell RNASeq
written by viktorfeketa •
-
Should I normalize the data before or after filtering to a particular cell type?
written by gt •
-
If we use NMF for clustering single-cell, what are the k factors represents?
written by Raz •
-
how to find each cluster in single-cell represent which cell type?
written by Raz •
-
Best package to cluster a single cell dataset using marker gene lists retrieved from elsewhere?
written by A248 •
-
How to compare transcriptomic profiles of two cell types (single cell RNA-seq)?
written by ma1478 •
