This is a test version of Biostars. For the public version, visit https://www.biostars.org.
DESeq2 parallel segfault - 'memory not mapped'

Kindly help in the best possible way to run Deseq() on large datasets, parallel using

pacman::p_load(DESeq2, BiocParallel)

## Code tried on deseq object
dds = DESeq(dds, parallel = TRUE, BPPARAM=MulticoreParam(1))
##### OR
dds = DESeq(dds, parallel = TRUE, BPPARAM=MulticoreParam(4))

Error encountered is a segmentation fault

 *** caught segfault *** address 0x2af683500040, cause 'memory not mapped'
parallel deseq2 biocparallel segfault

0 answers

No answers yet.

Log in to answer this question.