Hi all, I am trying to use GATK mutect2/haplotype (default option) for variant calling on a bam file from single-cell RNAseq data; however, the generated …
I am analyzing variant calling on RNASeq data using somatic pipeline of mutect2 function in gatk. To fileter the resulting variants, I need to filter …
<p>I have developed a pipeline for variant calling from exome sequence data, and I currently use ANNOVAR to annotate the obtained variants. But I would …