vg sort gam file by read name
I wonder if there is a way to sort gam file via vg by the read names. I know there is a command vg gamsort but it seems that this tool does not sort the gam file by name.
Thanks!
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glenn.hickey
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Yihang •
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Yihang •
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There is no command to do it directly. You can convert to GAF and sort that though:
vg convert graph.vg -G aln.gam | sort -k1 | vg convert graph.vg -F - > aln.sorted.gam
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