convert raw count to seurat object
I am trying to create a seurat object from raw.tsv.gz file, downloaded from GEOexpression (GSE158769). I tried to read it f1<-read.delim("GSE158769", stringsAsFactors=F, header=T) f1 f2<-createseuratobject(counts=f1) f2
It takes forever to open and read. I tried several times, please help me with this.
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rpolicastro
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Rimanpreet •
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Rimanpreet •
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You should instead use
freadfromdata.table.