smallRNA profiling using HTSeq error
Hello,
I want to create a "count" file using HTseq. I have both BAM file and gtf file:
htseq-count -f bam -s no -i AK1a_clean_Aligned.sortedByCoord.out.bam gencode.v42.chr_patch_hapl_scaff.annotation.gtf >> AK1a_counts.txt
It still gives an error:
htseq-count: error: the following arguments are required: featuresfilename
Can someone please tell me why that is? Thanks a lot!
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GenoMax
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abhay.kanodia •
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written
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abhay.kanodia •
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