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16s sequence Identification

Hello everyone. I know my question is a bit backdated but it is important for me to know.

Is there any other tools or website to identify the species of bacteria from 16s sanger sequencing other than NCBI blast?

It would be helpful if you share your thoughts.

Thank you.

identification 16s sequence
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updated by 5heikki 5heikki • written by saifulislam99121 • saifulislam99121

1 answer

The main two databases are Silva and Greengenes.

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written by Asaf Asaf

IMO (from best to worst):

  1. Silva
  2. RDP
  3. Greengenes
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written by 5heikki 5heikki

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