How to generate pathway analysis report for a list of proteins

I have a list of genes in a text file and I want to create a pathway enrichment report by using python or R like this:

pathway example

I tried Bio.KEGG module of python but did not get successful. Can anyone help me?

python r

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updated 3.7 years ago by Ram

• written 3.8 years ago by anasjamshed

1 answer

There are quite a few Bioconductor packages that can do pathway analysis (e.g. clusterProfiler to give just one), sometimes with overlapping features or targeting a specific use case or data type, just search a bit.
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written 3.8 years ago by Jean-Karim Heriche

Is there any package exists in python similar like this>?

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written 3.8 years ago by anasjamshed

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