Pairwise percent identity matrix generation?
I want to get a matrix of pairwise percent identities between a group of aligned 16S sequences. I'm having trouble identifying what tool to use for this?
• 1,508 views
•
link
updated
by
GenoMax
•
written
by
pearl2070 •
•
written
by
pearl2070 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Sequence alignment matrix
written by Hansen_869 •
-
Obtain a --gene-trans-map file after rnaSPAdes
written by UserA •
-
How is sequence similarity different than percent identity from BLASTP?
written by Viraj •
-
All human pairwise sequence identities or similarities
written by Sergio Martínez Cuesta
-
percent identities for all by all protein alignment
written by bioguy
-
Overview questions about K-nearest neighbor classification methods
written by dllopezr •
-
Make matrix of protein pairwise identities/similarities from multiple protein sequences
written by al-ash
-
Recursive Pairwise Alignments
written by Whetting
-
Getting Pairwise Sequence Distances From The Muscle Command-Line
written by Will
-
Visualizing Pairwise Distance Between A Group Of Sequences
written by David M
Aligned with MUSCLE in MEGA, but I can use a different alignment tool if needed.
Past threads:
Make matrix of protein pairwise identities/similarities from multiple protein sequences
PIM from MUSCLE