When to merge scRNA datasets
Hello-- I am running an scRNA-seq analysis against 10 different generated datasets. They are either separated into FLOX or KNOCKOUT. Do you analyze each dataset separately, or do you merge the 5 FLOX together and separately merge the 5 KNOCKOUT datasets *and then analyze the assumed 2 datasets instead of 10?
Could you explain this more. Thank you!
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What do you mean when you say "merge"? Are you referring to integration of the data sets? Are the 5 FLOX samples replicates?
Figure it out. thanks