Implement the pgsc-calc pipeline
I need to implement a pipeline to create personal genomics report from VCF files, based on the use of https://pgsc-calc.readthedocs.io/en/latest/ pipeline
I need a frelancer to set up this.
pgscatalog
nextflow
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Tool: Open-source tool for cancer variant interpretation from VCF files
written by Punith •Hello everyone, I recently developed a bioinformatics project focused on cancer variant interpretation using VCF files. The tool processes VEP-annotated VCF data and generates structured …
-
Herald: The Biostar Herald for Thursday, August 22, 2024
written by BiostarThe **Biostar Herald** publishes user submitted links of bioinformatics relevance. It aims to provide a summary of interesting and relevant information you may have missed. …
-
how to use Hemtools bed2vcf?
written by MobiusT •I need to use Hemtools to convert a bed file to vcf. I have [this][1] manual bu I didn't understand how to use it from …
-
Getting unspliced counts for scRNA-seq data generated from cellranger aggr pipeline
written by Luna_P •Hi everyone, I have 15 scRNA-seq samples that I have aggregated with cellranger aggr pipeline. My problem is that, I would like to use [scVelo][1] …
-
Problem using PGSCatalog pipeline
written by nankos77 •]We try to use PGSCatalog pipeline (https://pgsc-calc.readthedocs.io/en/latest/# ) but we have some problems notified by Ubuntu (see attached screenshots) when using PGS provided as example. …
-
Job: Freelancer for setup informatic pipeline
written by nankos77 •I need to set up a pipeline using https://pgsc-calc.readthedocs.io/en/latest/# and I'm looking for a freelancer
-
Query a single sample VCF for a list of rsid, do calculations and generate a personal genomics repo…
written by nico77 •Hi, I need to generate a personal genomics report based on some rsid (mainly SNPs), starting from single sample VCFs. Till now, I manually search …
-
Adding SNP ID to original VCF file
written by rs146 •Hello, I am fairly new to bioinformatics and I'm stuck on how to go about this. I have been trying to prune snps based on …
-
Tool: VCF to FHIR Converter
written by bdolinGreetings, We have developed a tool that converts VCF files into the latest FHIR Genomics format, available here: https://github.com/openelimu/VCF-2-FHIR We currently translate simple variants, along …
-
Google Cloud - VCF Creation Support from .bam
written by DavidStreid •What is the best way to use Google Cloud/Genomics to create VCF files from .bam files? Is there specialized support or a package, or should …
Hi,
Sorry it took so long to catch this but the spambot marked your post as spam as the title contained a URL. I've fixed it now.
This is a
Question-type post and not a job listing, please be careful when you select post type in the future. I've fixed it for you this time.