HTseq error and 0kb output file
Hello, I am trying to run htseq and it ran and in the end generate the empty file. and slurm file show the following warning :
100000 GFF lines processed.
200000 GFF lines processed.
300000 GFF lines processed.
400000 GFF lines processed.
500000 GFF lines processed.
..
.
.
.
.
46600000 SAM alignment record pairs processed.
46700000 SAM alignment record pairs processed.
46800000 SAM alignment record pairs processed.
46900000 SAM alignment record pairs processed.
Warning: Mate records missing for 2 records; first such record: <SAM_Alignment object: Paired-end read 'A01877:57:HG32MDRX2:2:1135:7193:4398' aligned to chr4:[156414311,156414462)/->.
46973143 SAM alignment pairs processed.
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GenoMax
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aimanbarki •
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aimanbarki •
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