how to visualizing residue wise pairwise protein alignment
1 answer
Then you probably want plotcon: https://emboss.sourceforge.net/apps/release/6.0/emboss/apps/plotcon.html
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Use one of the options in EMBOSS: https://emboss.sourceforge.net/apps/cvs/emboss/apps/alignment_dot_plots_group.html
hi GenoMax , what I want is more like what is done here http://rothlab.ucdavis.edu/genhelp/plotsimilarity.html . But I am not able to reproduce this. Are there similar tools to plot similarity score per residue ?