Running several rounds of the same rule in Snakemake
I'm writing a workflow and there are several parts where I have to run several rounds of the same rule Something like this
Input 1 -> Same Rule -> output1/input2 -> Same Rule -> output2/input3 -> Same Rule -> output3/input4
Ideally I would like to just use one Rule for this instead of having multiple very similar rules. Is there a good way to do this?
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dariober
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shjenkins94 •
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shjenkins94 •
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Add more details about what you're supposing to do with some toy examples.
See if this helps https://stackoverflow.com/questions/72808924/a-way-to-iterate-over-one-rule-by-changing-an-index-in-the-filename-using-wildca Otherwise add more detail as suggested by Shred