qc3C software for testing Hi-C data
Heys,
I've just found this software called qc3C for testing the quality in Hi-C data (https://github.com/cerebis/qc3C). I was wondering if any of you used it, as I created the multiqc file out of it but I am struggling a bit to understand it.
Around 60% of my reads were accepted and are marked as valid. Is this a good result?
Thanks in advance!
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There is a good paper on qc3C: Reference-free quality control for Hi-C sequencing data which may provide more information as to whether your output mutltiqc file tells you what you want to know.