Dear all, Is there any best practice for the mouse snp indel vcf files using GATK Mutect2 for mouse whole exome data? For mm10, it …

Hi! The mouse strain C57BL/6J is used as a reference genome in SNP variant call files created by the mouse genomes project for other in-bred …

Dear community members, I have an Illumia array and after transformation to VCF it looks like (one line as an example) #CHROM POS ID REF …

Applications are invited for a postdoctoral position in the [research group of prof. Martin Lysak][1] to join project investigating the structure and evolution of *Biscutella* …

Applications are invited for a postdoctoral position in the research group of [prof. Martin Lysak][1] (CEITEC, Masaryk University, Brno, Czech Republic) to join project investigating …

Hi, I am confused about variants (mainly SNPs and InDels) detected from variant calling and de novo genome assembly. Of course, using which type of …

I am creating the tagdirectories using Homer but can't get it to find the installed genome. I am running > makeTagDirectory $tagdirname/$filename\_tagDir -format HiCsummary $filename\_Summary.txt …

Hi, I was wondering which NCBI reference genome assembly to use for mouse GRCm38, if I don't want to use the UCSC mm10. I thought …

Hi, We have multiple samples from the gut/intestine track of mice and we think that there is a contamination from bacterial genome(s) in the data …

<p>Hi everyone!</p> <p>I am looking at co-occurring events in transgenic FVB mice tumours. First, I need to filter out snps and indels. I was reading …