Only mapping reads that match reference and are longer than a given length in Minimap2
Hi all,
I would be most grateful if someone could tell me the flags to use in Minimap2 to align Nanopore reads to a small part of a genome. My attempts seem to have aligned other reads with small sections of homology, but I just want to map reads with >2000 bp of matching homology.
Could anyone help tell me which flags to use in Minimap2 to do this?
Many thanks in advance
Best
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zack.saud •
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