Predict interactions between lncRNAs and other RNA types (mRNAs, miRNAs)

Question

[bart]

Hi,

I want to find which RNA types are targeted by some differentially expressed lncRNAs that I've found. Is there any preferred software such as an R package that I can use to input my DE lncRNAs which then ouputs other RNA types that the DE lncRNAs interacts with?

I've found LncRRIsearch (http://rtools.cbrc.jp/LncRRIsearch/) but this does not allow me to input lncRNAs in bulk I think and I have to input everything one by one.