Predict interactions between lncRNAs and other RNA types (mRNAs, miRNAs)
Hi,
I want to find which RNA types are targeted by some differentially expressed lncRNAs that I've found. Is there any preferred software such as an R package that I can use to input my DE lncRNAs which then ouputs other RNA types that the DE lncRNAs interacts with?
I've found LncRRIsearch (http://rtools.cbrc.jp/LncRRIsearch/) but this does not allow me to input lncRNAs in bulk I think and I have to input everything one by one.
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