Hydrogen bond analysis of trajectory using CPPTRAJ · Biostar

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Hydrogen bond analysis of trajectory using CPPTRAJ

I have done MD simulation of homo dimer protein using Amber20 and I want to perform H bond interaction analysis (protein-protein intermolecular and intramolecular, protein with lipid head groups and protein with solvent molecules). My trajectory output files format is .nc If anyone knows how to calculate please help me.

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written 3.9 years ago by handa •

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