NGS Ubunut commands
I'm struggling this the linux/shell commands for NGS. Any tips?
What is the Linux code to calculate the total number of lines in the FASTQ file and store it into a variable called line_count. Requested that I use the cut and wc commands.
How to calculate the total number of reads from the total number of lines and store it into the read_count variable. The read_count should be the line_count / 4.
How to calculate the total number of reads using the value stored in the line_count variable above. read_count=
Print the total number of reads
echo
Print the input adapter sequence
echo
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