Create consensus sequence with ambiguity codes using HIFIASM allignment
I've assembled a sequence from PacBio sequencing using hifiasm tool. I now have a consensus sequence (.p_ctg) and two phased haplotypes. I would like to, however, obtain from the phased haplotypes a consensus sequence in the ambiguity code form, so I can run it on PSMC.
Does this make sense?
Thank you
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david.lerner •
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