Hi,

I have a bed file with overlapping regions. Say:

chr1    100 300
chr1    200 300
chr1    500 800
chr1    700 900

I would like to create a new bed file with regions that do not have any overlaps but still contain the same exact coordinates. This is the desired output:

chr1    100 200
chr1    200 300
chr1    500 700
chr1    700 800
chr1    800 900

Is there a common tool for this?