Hello.

Now I'm trying to remove PAR region from my X and Y chromosome vcf file for using check-sex option in plink.

Regard to PAR1 and PAR2, I could find their exact positions on hg38, but I could not find XTR(PAR3) region on hg38 although its approximate position was known (https://link.springer.com/article/10.1007/s10142-013-0323-6).

I imagine that there are some difficulties to say exact position of XTR.

So, how can I remove the effect of XTR(PAR3)?

Thanks