I can't do RMSD of two ligands using pymol · Biostar

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I can't do RMSD of two ligands using pymol

Hi! When I tried run the command PyMOL>*align ALD_crystal_CA, ALD_pose_1, cycles=5* I got this error: Match: read scoring matrix. Match: assigning 1 x 2 pairwise scores. MatchAlign: aligning residues (1 vs 2)... MatchAlign: score 0.000 ExecutiveAlign-Error: atomic alignment failed (mismatched identifiers?).

When I tried to run the command PyMOL>cealign ALD_crystal_CA, ALD_pose_1 i got : CEalign-Error: Your target selection is too short.

What can I do to solve this trouble? Thanks.

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written 4.2 years ago by Welington •

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