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Get strand information from genomic region

Hello , i'm wondering if there is a way ( maybe a R package already developed ? ) to get the strand information (+ or - ) related to my peaks. Actually, it's a dataframe , with 3 columns , chr , start, end , i would like to add a strand columns with the right information .

Thank you

annotation strand genomic region
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written by abdelhamid.sta • abdelhamid.sta

Peaks based on what? Something ike ChIP-seq? That would be unstranded as it is DNA-seq and DNA is double-stranded.

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written by ATpoint ATpoint

1 answer

It's peaks based on atac seq data , and yeah your are right , i realized it , it make no sense

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written by abdelhamid.sta • abdelhamid.sta

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