Bacterial whole genome pathway analysis
Hi all, I have several new bacterial genomes. I ran kegg's blast koala on the (predicted) protein data. Now I want to compare pathways: see which of the genomes have the same pathways and which have unique ones. Is there a tool or R package for that? Or even better, is there a tool that can also create a visualization of the results? Thanks in advance
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You may want to give DRAM a look. It will give a nice summary of major metabolic pathways, and can be customized. See Figure 3 in their paper.
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