R: Plot differences in DNAStringSet sequences

Hi,

I want to compare a DNAStringSet with very similar sequences (small Levenshtein distance ~2) and I'm searching for an R package which can in the best case take the DNAStringSet as input and outputs me some plot which nucleotides are constant and which nucleotides vary a lot.

I'm happy for any recommendations.

Thanks in advance

dnastring r

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updated 4.4 years ago by cpad0112 2.1K • | written 4.4 years ago by Philipp 1

you can look at sequence logo/web logo.

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written 4.4 years ago by cpad0112 2.1K

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