GDCquery - warning
Hi, I have a question. Is it possible to somehow remove the warning?
query1 <- GDCquery( project = "TCGA-COAD", data.category = "Simple Nucleotide Variation", data.type = "Masked Somatic Mutation", legacy=F)
Warning: There are more than one file for the same case. Please verify query results. You can use the command View(getResults(query)) in rstudio
ooo Check if there results for the query
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Negatyvna •
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If you wish to just "somehow remove the warning", use
suppressWarnings. If you want to address the underlying problem (which is what you should be doing), follow the recommendations in the message and look atgetResults(query)and see if you can be more specific about the dataset you want.I tried all the options and still have the same error, does anyone have any idea?
What are "all the options" that you tried?
I tried to set up workflow.type = "Aliquot Ensemble Somatic Variant Merging and Masking", experimental strategy are the same in the sample, I tried to look for duplicated samples, e.g. the id showed nothing to me.