AnnotationHub; Error: failed to load resource
I wanted to obtain Metarhizium Acridum OrgDb by AnnotationHub, and then perform GO or KEGG enrichment analysis by clusterProfiler, but the error occurred when I downloaded the target database. Any suggestions to solve the problem are welcome. Thank you.
> hub <- AnnotationHub::AnnotationHub()
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snapshotDate(): 2021-10-20
> query(hub,"Metarhizium acridum")
AnnotationHub with 1 record
# snapshotDate(): 2021-10-20
# names(): AH10415
# $dataprovider: Inparanoid8
# $species: Metarhizium acridum
# $rdataclass: Inparanoid8Db
# $rdatadateadded: 2014-03-31
# $title: hom.Metarhizium_acridum.inp8.sqlite
# $description: Inparanoid 8 annotations about Metarhizium acridum
# $taxonomyid: 655827
# $genome: inparanoid8 genomes
# $sourcetype: Inparanoid
# $sourceurl: http://inparanoid.sbc.su.se/download/current/Orthologs/M.acridum
# $sourcesize: NA
# $tags: c("Inparanoid", "Gene", "Homology", "Annotation")
# retrieve record with 'object[["AH10415"]]'
> MAC.OrgDb <- hub[['AH10415']]
downloading 1 resources
retrieving 1 resource
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loading from cache
Error: failed to load resource
name: AH10415
title: hom.Metarhizium_acridum.inp8.sqlite
reason: this db is of type Inparanoid8Db but this is not a defined class
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1 answer
hello, did you solve this problem? I meet the same situation as you, the same species: Metarhizium Acridum, cannot load resource. thanks for your answer.
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