How to extract mitgenomes from WGS data for non model organisms ?
HI
Suppose if we have ~30-40 X coverage genome data, how to extract mitogenome from whole genome data. I saw some pipelines (Norgal & MitoZ) do that. It doesn't work well for my data. Hardly recovered ~10kb single or multiple contigs representing only half of the mitogenome.
Any suggestions.
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