Deseq2 output to ActivePathways
Dear all, Is there anyway to convert DEG output of Deseq2 to the P-value matrix input of ActivePathway package (https://github.com/reimandlab/ActivePathways).
> head(scores)
X3UTR X5UTR CDS promCore
A2M NA 0.33396764 0.9051708 0.4499201
AAAS NA 0.42506012 0.7047723 0.7257641
ABAT 0.9664126 0.04202735 0.7600985 0.1903789
ABCC1 0.9383432 0.45994435 0.2599319 0.2980455
ABCC5 0.8021028 0.44789017 0.4788846 0.8447995
ABCC8 NA 0.46993557 0.6890250 0.9226617
Kind Regards, Rahel
• 869 views
•
link
updated
by
Basti •
•
written
by
rahel14350 •
•
written
by
rahel14350 •
0 answers
No answers yet.
Log in to answer this question.
As indicated in your link, just create a matrix with your p-values from your output