How to create .fmi files in kaiju for taxonomic classification?

Does Kaiju create .fmi index files during kaiju-makedb command or we have to perform any extra step for that?

kaiju taxonomy

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updated 2.5 years ago by VineethVenumadhavan •

• written 4.4 years ago by nainakmr20 •

It does when you build the database with kaiju-makedb

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written 4.4 years ago by zorbax

Thanks I got it.

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written 4.3 years ago by nainakmr20 •

I think this extra step of making .fmi index is performed when we are creating a custom db, where you run kaiju-mkbwt and kaiju-mkfmi.

Please refer this section in kaiju github page

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written 2.5 years ago by VineethVenumadhavan •

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