Gene Annotation after EdgeR in R
Dear All,
I have an EdgeR analysis for Human genes. Now I want to add the annotation for all individual genes in a column against the genes. Is there a package in R that takes a list of genes and generates the annotation against each gene?
Thank you in advance!
• 1,165 views
•
link
updated
by
ATpoint
•
written
by
saamar.rajput
•
written
by
saamar.rajput
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to generate a Venn diagram from edgeR DEG results?
written by Mehmet
-
Kegg annotation for gene
written by ehruan •
-
Creating binary matrix of absence/presence of genes in multiple column lists
written by lmu •
-
Reactome Pathway Analysis from command line
written by saamar.rajput
-
Looking for recommendations of R package for GO enrichment analysis based on gene list and a Trinot…
written by BioBing
-
Tool for Human Gene Functional classes in R
written by saamar.rajput
-
IPA Core analysis
written by Laura •
-
How to analyse normalized read count?
written by pbio
-
Bioconductor Human Annotation Database Packages
written by koen.vdberge •
-
How To Categorize Rna-Seq Results By Genes: Ribosomal, Mithocondrial, Housekeeping...
written by 2lfontaine •
What do you mean by "annotate"? If you want functonal enrichment check the gprofiler2 package or its GUI:
https://biit.cs.ut.ee/gprofiler/gost
https://cran.r-project.org/web/packages/gprofiler2/index.html
I am sorry it was not clear enough, but i want functional annotation for every single gene. Like what is the function of this one gene, i want this for a list of genes.
This does not exist I think in the way you imagine it. You cannot enrich a single gene for anything, and a gene's function can be diverse depending on cellular context. You can pull out simple gene descriptions with tools like biomaRt, but for enriched terms you need to provide gene lists that then are to be compared to annotated pathways and processes. After all there is manual literature work to be done to interpret your results.