results from EMMAX software
Hi there, I am using EMMAX software for an association analysis, as described in the manual , each line consist of 4 : SNP ID, Beta, SE(beta) and p-value in the output file (.ps file). But I just received 3 column ( I think just SNP ID, SE(beta) and p-value) in the out put like below:
SNP1 -0.100215783 0.23095596
SNP2 -0.154472206 0.050492626
SNP3 -0.06535533 0.537008626
SNP4 -0.041412454 0.611070227
SNP5 -0.167001348 0.013342496
SNP6 -0.005730355 0.958920667
SNP7 0.148709792 0.057797328
SNP8 -0.214196023 0.005016772
Is that right? I would be grateful if there are more experiences, or advises about this result
1 answer
You can download Intel compiled version of emmax on this page, and you'll get 4 columns then.
In your result, the 3rd column is p-value.
Anyway, I am not sure whether the result (p-value) differs between two versions of emmax.
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Zhitian Wu •
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