Vcf stat about consequences
To annotate my vcf i use vep, for that i Split my vcf in 100 small vcf to do it in parallele.
Vep is able to produces an HTML report with type of variant, impact etc. But i Can get it for each small vcf Split, how to merge it to obtain one HTML report for the whole vcf ?
Maybe there are other tools to get it ?
Thanks in advance
• 877 views
•
link
updated
by
Kevin Blighe
•
written
by
quentin54520 •
•
written
by
quentin54520 •
1 answer
Hi quentin54520,
Please run VEP on the original VCF, i.e., before you split it into 100 smaller VCFs.
Kevin
• 0 views
•
link
written
by
Kevin Blighe
Log in to answer this question.
More posts like this
-
Further splitting single-chromosomes VCF files to decrease their size to annotate with VEP
written by mmorad •
-
Annotations vep : keep high impact in any transcript + canonical
written by quentin54520 •
-
Ensembl VEP on aws
written by quentin54520 •
-
Vep : MNP phased genotype
written by quentin54520 •
-
VEP for cancer annotation using COSMIC
written by yussab •
-
Why VEP annotates non-variants (homozygous reference)?
written by magnolia •
-
VEP cache trancript versions
written by Chadi Saad
-
VEP and splicing site region parameters
written by Titus
-
Get syndrom field on my excel table
written by cristina_sabiers
-
How to annotate a VCF with Entrez Gene IDs
written by Ward Weistra
