Plot PCA for .IMISS file?
Hello,
I have data from an .Imiss file (https://www.cog-genomics.org/plink/1.9/formats#imiss), and I would like to plot a PCA to see if there is a relationship of the Missing Call Rate and the clustering of the samples.
In general the quality of my samples is low and I want to investigate how this effects the clustering of my samples in my usual PCA plot of genetic difference.
How could I plot this?
Thank you
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Carla Hazel •
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