I have a meta-population data in vcf file. Is there a way to separate them according to their population/country and the outcome would be countryname.vcf?
Hi everyone: I have a VCF file having multiple population samples. Is there any way to calculate the observed counts of genotypes called and observed …
Hi everyone, We have exome-chip data (disease cases and healthy controls) from three different studies. Currently, for each study I have performed group-based tests (CMC …
Can you provide an example of the VCF?
Hi Iraun -- Here's an example of my vcf. I'm trying to separate VCF based on their countries (Brazil, Colombia, etc):
fileformat=
fileDate=
source=
ALT=<ID=NON_REF,Description=
contig=<ID=CHR1,length=1021664>
INFO=<ID=AC,Number=A,Type=Integer,Description="
FILTER=<ID=PASS,Description="All filters passed">
FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
GATKCommandLine=""
CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Brazil01 Colombia01 ...
CHR1 1459366 . A G 634.58 PASS
Maybe you can use any of the solutions suggested in Individual VCF files from main VCF file?