complete genomics 2.0 documentation · Biostar

This is a test version of Biostars. For the public version, visit https://www.biostars.org.

complete genomics 2.0 documentation

Hello, in older versions of complete genomics data there are no .vcf files like there are in new versions. Which files under "ASM" can you convert to a .vcf file? Would it be the var-ASM ID file under ASM? complete genomics documentation: https://www.completegenomics.com/documents/DataFileFormats_Standard_Pipeline_2.0.pdf

vcf shapeit4 completegenomics

• 540 views • link

written 4.4 years ago by Hibah •

0 answers

No answers yet.

Log in to answer this question.

More posts like this

How to open AlphaFold .pkl files
written 2.1 years ago by fvasquez •

Hello. I am struggling to open the .pkl files produced by AlphaFold. I installed jax, which is required by pickle to open .pkl files, and …
Will this method for genomic population structure analysis with VCF file help good for my work?
written 3.3 years ago by kgwkk2 •

I was finding method for handling multi-calling VCF file and convert format for analyzing population genomics for fungi, which means dividing species or strains by …
Convert .bam file from version 1.6 to 1.4
written 3.4 years ago by Abhi •

I have a package (breakseq) that fails on newer versions of bam files. It uses older version of pysam which is unable to read the …
bcftools merge - regex pattern and flag to choose?
written 5.9 years ago by akshaykum684 •

Hello Everyone, I am new to bioinformatics and vcf files. I was following some tutorials online to generate `Variant_QC` measures such as call_Rate, n_het, etc …
Determine adapter sequence in RNA-seq samples
written 6.8 years ago by sabaghianamir70 •

Hello I was searching about, How chose the correct Adapter triming in this pdf [https://support.illumina.com/content/dam/illumina-support/documents/documentation/chemistry_documentation/experiment-design/illumina-adapter-sequences-1000000002694-11.pdf][1] . but i dont know which one, i just know …
Isn't fastq file header suppose to have barcode sequence?
written 8.5 years ago by salamandra

So, I have ChIP-seq sample with this barcode: CGATGT and I want to remove the barcodes and adapters. But when looking to fastqc files in …
TCGA Birdseed vs MAF vs VCF
written 9.9 years ago by e.chin •

Hello, I am working with RNA-seq data from TCGA and wanted to find SNVs for the datasets. The data comes in a variety of formats …
Complete Genomics Sv File Filetring
written 12.6 years ago by kanwarjag

we are working on seq var (gene var...tsv) file/s which we recieved from complete genomics. I understand that CG has its own tools CGA tools …
Mastervar - Complete Genomics Data Format To Vcf
written 13.1 years ago by Peixe

Hi, I have been recently dealing with the [Personal Genomes Project][1], and trying to work with the data. I downloaded the raw data for an …
Where Can I Find Data Sets Of Cancer Publicly Available?
written 14.6 years ago by Pascal

<p>Hi </p> <p>Where could I find data sets of cancer pairs (tumor/normal genome) publicly available?</p> <p>I would like to test some tools of variants detection …