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Getting the peaks on the perticular coordinate

Hello folks i have generated peaks from the macs2 from the output bed i want to get the peaks on the specific coordinates can any one suggest me any option for example chr1 5019400-6000000 get all peaks on this perticular coordinates i have tried bedtools intersect some how it did not worked any other method is avilable please suggest me

Thank you

chip-seq ngs macs2 analysis
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updated by ATpoint ATpoint • written by luckysardar171 • luckysardar171

What did not work? "did not work" is not a valid error message". bedtools intersect is one of the de facto standards for such a task. Alternatively, sort and bgzip your file and use tabix.

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written by ATpoint ATpoint

ATpoint there was no error msg gave me blank output. my objective is to get the peaks in that specific coordinates

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written by luckysardar171 • luckysardar171

I cannot help you if you do not add any details like code or data.

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written by ATpoint ATpoint

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