More posts like this
-
fisher's method for p-value combination in meta-analysis
written by Nelo 2My aim is to conduct a meta-analysis of RNA seq data from different plant species that belong to the same family. I did individual analysis …
-
calculate p value and associated z score for snp-gene pair
written by rheab1230 15Hello everyone, I have genotype file and gene expression file. I want to see whether three of my rsid in genotype file is associated with …
-
WGNCA and gene expression
written by mzezza 1Hi, I've got a Gene Expression matrix (with GeneID and samples) and I'd like to perform a network analysis with WGCNA R package. Could anyone …
-
WGCNA and microarray gene expression
written by mzezza 1Hi, I've got a gene expression matrix (with GeneID and samples) and I'd like to perform a network analysis with WGCNA R package. Could anyone …
-
Looking for recommendations of R package for GO enrichment analysis based on gene list and a Trinot…
written by BioBing 15Hi all, I was wondering if some of you could recommend me a good R package for GO Enrichment Analysis and creating graphs of functional …
-
Cuffcompare on the merged GTF file produced by Stringtie
written by seta 191Hi all, For doing an RNA-seq analysis, I used STAR for mapping reads to the genome followed by Stringtie for genome-guided assembly. I downloaded the …
-
how to extract all the gene in chromosome X in bed file using R package (rtacklayer)
written by enterid 1I am working on a specific on RNA gene expression project , after prcoessing RNA seq , i get a bed file with all the …
-
How to combine expression values of multiple probes for one gene?
written by ayanava18 4I am a bit new to R Bioconductor and microarray analysis. I have loaded a GEO series matrix file (GSE2990) from GEO database in R …
-
How to write effective and stable bioinformatics pipeline in R ?
written by jack 99Hi all, I'm planning to write a bioinformatics pipeline in R. Basicallly it will do gene expression quantification(which is in C++) and DE gene analysis …
-
How Do You Avoid Getting 'Scooped' In The Biological Sense?
written by ugly.betty77 106<p>When I worked in physics and electrical engineering, 'getting scooped' usually meant someone reporting your specific finding before you and that finding can be an …
How could one possible answer this? What exactly is the problem? Did you read the manual? What does Excel has to do with RRA? Do you have R knowledge?