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FINEMAP get different significant SNPs.

Hello guys, I am running FUNMAP v1.4 on my GWAS summary statistics, but i get different significant (post probability >0.95) SNP every time I running FINEMAP v1.4 with totally same LD and GWAS summary statistic files. Someone tell me this is because FINEMAP using SSS algorithm, which has random processing during fine-mapping. how to solve this problem, please give me some advices.

gwas finemap post-gwas

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