Reference and snp calling depending
Hello!
How does the reference genome influence the nucleotide we see in a read of interest? For example, can the probability of viewing A become larger or smaller depending on the reference nucleotide in the same position? Will the situation change if we are studying the ancient read?
Thanks!
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
CellChat vs Nichenet
written by Anst •
-
pysam condition writing bam
written by Anst •
-
Reference influencing
written by Anst •
-
Variant calling
written by Anst •
-
Get per-nucleotide mapping position for each mapped reads from bam file
written by Changhao Li •
-
What are reference alleles and alternate alleles in VCF (Variant Call Format) file?
written by Tina •
-
BWA mapping to multiple reference genome
written by dsklsdoiwld •
-
Calculating sequencing errors
written by khanirfanbioinformatics •
-
What is best open source tool to create a report from multiple sequence alignment
written by vc •
-
p-value for mutation calls from multiple reads
written by robertobfisher •
